PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.5CF9R
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 173aa    MW: 18970.1 Da    PI: 7.351
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.5CF9RgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.94.3e-091457855
                 HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                 +Er RR ++N  f +L+  +P +      K +K  + +++++YIk+L+
  Aradu.5CF9R 14 AERSRRLKMNRLFTQLQATIPRP----LSKATKEVVITETIRYIKELE 57
                 6*********************6....59****************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.265656IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-41262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-61457IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-111472IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.98E-51459No hitNo description
SuperFamilySSF474593.66E-111480IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MKGDSECGGS SMPAERSRRL KMNRLFTQLQ ATIPRPLSKA TKEVVITETI RYIKELERKK  60
NNLEQIKELL IQNHASGTTF MLPCMADADN CSVTVTVSAN VAFFGIQTVA RRGLITMILE  120
VFSNHKAEIL AANVAVNEGI LTFAVTALLQ IVADGEGEGE GAVEMIKREI MTL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015939010.11e-125PREDICTED: uncharacterized protein LOC107464603
TrEMBLV7CAD82e-48V7CAD8_PHAVU; Uncharacterized protein
STRINGGLYMA17G02615.14e-47(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF143301314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-06bHLH family protein